• Alignments

  • MultAlin Multiple sequence alignment at INRA, Tolouse

  • MultAlin at PBIL, Lyon

  • webPRANK excellent multiple sequence alignment

  • TM-align structural alignment

  • Dali Server Protein Structure Database Searching

  • CE A method for comparing and aligning protein structures

  • Analysis

  • ExPASy Proteomics Server

  • Translate tool at ExPASy

  • K2D2 Estimation of secondary structure from CD spectrum

  • SUPERFAMILY structural annotation for proteins

  • SMART sequence analysis

  • Pfam at the Sanger Institute

  • Entrez andBLAST at NCBI

  • RPF An NMR protein structure quality assessment tool

  • HMMER biosequence analysis using profile hidden Markov models

  • PCDDB Protein Circular dichroism Data bank

  • Modelling

  • phyre2 Protein Homology/analogY Recognition Engine

  • ESyPred3D homology modeling program

  • 3D-Jigsaw Comparative modelling

  • PROTEUS Structure Prediction Server 2.0

  • PPT-DB The Protein Property Prediction & Testing Database

  • NetSurfP Surface Accessibility and Secondary Structure Predictions

  • foldit Solve Puzzles for Science

  • PEP-fold server De novo structure prediction

  • GalaxyWEB a web server for structure prediction

  • CMWeb Contact Map Web Viewer

  • PSC Visualization Protein Surfac Classification

  • PDB2CD Create CD spectrum frpm PDB

  • Cpipe a pipeline for cys analysis

  • Phylogeny

  • Divein automated maximum likelihood phylogenetic analyses

  • Evolview Visualize phylogenetic trees

  • T-REX Inferring, validating and visualizing phylogenetic trees

  • Adaptive Evolution Server Identifying sites under selection

  • Mobyle, a portal for bioinformatics analyses